G. Abrami, A. Henlein, A. Lücking, A. Kett, P. Adeberg, and A. Mehler. Unleashing annotations with TextAnnotator: Multimedia, multi-perspective document views for ubiquitous annotation. Proceedings of the Seventeenth Joint ACL - ISO Workshop on Interoperable Semantic Annotation (ISA-17), June 2021.

A. Lücking, C. Driller, M. Stoeckel, G. Abrami, A. Pachzelt, and A. Mehler. Multiple Annotation for Biodiversity: Developing an annotation framework among biology, linguistics and text technology. Language Resources and Evaluation, 2021.

A. Pachzelt, G. Kasperek, A. Lücking, G. Abrami, and C. Driller. Semantic Search in Legacy Biodiversity Literature: Integrating data from different data infrastructures. Biodiversity Information Science and Standards, Pensoft Publishers, volume 5, pages e74251, September 2021.

G. Abrami, A. Mehler, and M. Stoeckel. TextAnnotator: A web-based annotation suite for texts. Proceedings of the Digital Humanities 2020, 2020.

G. Abrami, M. Stoeckel, and A. Mehler. TextAnnotator: A UIMA based tool for simultaneous and collaborative annotation of texts. 12th International Conference on Language Resources and Evaluation (LREC 2020), European Language Resources Association, pages 891–900, 2020.

C. Driller, M. Koch, G. Abrami, W. Hemati, A. Lücking, A. Mehler, A. Pachzelt, and G. Kasperek. Fast and Easy Access to Central European Biodiversity Data with BIOfid. Biodiversity Information Science and Standards, Pensoft Publishers, October 2020.

C. Driller, M. Koch, G. Abrami, M. Stoeckel, A. Pachzelt, and G. Kasperek. Tracing back biodiversity to the 19th century via text mining. World Biodiversity Forum, Davos, Switzerland, February 23-28, February 2020.

C. Driller, M. Koch, G. Abrami, M. Stoeckel, A. Pachzelt, and G. Kasperek. Mobilising Biodiversity Knowledge By Mining Heritage Literature. World Biodiversity Forum, Davos, Switzerland, February 23-28, February 2020.

A. Henlein and A. Mehler. On the Influence of Coreference Resolution on Word Embeddings in Lexical-semantic Evaluation Tasks. 12th International Conference on Language Resources and Evaluation (LREC 2020), 2020.

J. Hildebrand, W. Hemati, and A. Mehler. Recognizing Sentence-level Logical Document Structures with the Help of Context-free Grammars. 12th International Conference on Language Resources and Evaluation (LREC 2020), 2020.

M. Koch and T. Hörnschemeyer. Biodiversity of the apterygote hexapods - a global assessment. 26th International Congress of Entomology, Helsinki, Finland, July 19-24, 2020.

G. Abrami, A. Mehler, A. Lücking, E. Rieb, and P. Helfrich. {TextAnnotator}: A flexible framework for semantic annotations. Proceedings of the Fifteenth Joint ACL - ISO Workshop on Interoperable Semantic Annotation, (ISA-15), May 2019.

S. Ahmed, M. Stoeckel, C. Driller, A. Pachzelt, and A. Mehler. BIOfid Dataset: Publishing a German Gold Standard for Named Entity Recognition in Historical Biodiversity Literature. Proceedings of the 23rd Conference on Computational Natural Language Learning (CoNLL), Association for Computational Linguistics, 2019.

C. Driller, G. Abrami, M. Koch, G. Kasperek, A. Pachzelt, and A. Mehler. Accessing knowledge from legacy biodiversity literature. Biodiversity Next, Leiden, Netherlands, October 22-25, October 2019.

C. Driller, G. Abrami, M. Stoeckel, M. Koch, and G. Kasperek. Tracing back biodiversity to the 19th century via text mining. 49th Annual Meeting of the Ecological Society of Germany, Austria and Switzerland, Münster, Germany; September 9-13, September 2019.

W. Hemati and A. Mehler. {CRFVoter}: gene and protein related object recognition using a conglomerate of CRF-based tools. Journal of Cheminformatics, volume 11, issue 1, March 2019.

W. Hemati and A. Mehler. {LSTMVoter}: chemical named entity recognition using a conglomerate of sequence labeling tools. Journal of Cheminformatics, volume 11, issue 1, January 2019.

W. Hemati, A. Mehler, T. Uslu, and G. Abrami. Der TextImager als Front- und Backend für das verteilte NLP von Big Digital Humanities Data. Proceedings of the 6th Digital Humanities Conference in the German-speaking Countries, DHd 2019, 2019.

M. Koch, C. Driller, I. Mikó, and M. Yoder. Exploring biodiversity knowledge by ontologies. Biodiversity Next, Leiden, Netherlands, October 22-25, October 2019.

M. Koch, C. Driller, C. Weiland, and T. Hörnschemeyer. Modern information technologies for the study of myriapod biodiversity. 18th International Congress of Myriapodology, Budapest, Hungary, August 25-31, August 2019.

M. Stoeckel, W. Hemati, and A. Mehler. When Specialization Helps: Using Pooled Contextualized Embeddings to Detect Chemical and Biomedical Entities in {S}panish. Proceedings of The 5th Workshop on BioNLP Open Shared Tasks, Association for Computational Linguistics, November 2019.

M. Stoeckel, W. Hemati, and A. Mehler. When Specialization Helps: Using Pooled Contextualized Embeddings to Detect Chemical and Biomedical Entities in Spanish. Proceedings of the International Workshop on BioNLP Open Shared Tasks (BioNLP-OST) 2019, Association for Computational Linguistics SIGDAT and Asian Federation of Natural Language Processing, 2019.

T. Uslu, A. Mehler, and D. Baumartz. Computing Classifier-based Embeddings with the Help of text2ddc. Proceedings of the 20th International Conference on Computational Linguistics and Intelligent Text Processing, (CICLing 2019), 2019.

T. Uslu, A. Mehler, C. Schulz, and D. Baumartz. {BigSense}: a Word Sense Disambiguator for Big Data. Proceedings of the Digital Humanities 2019, (DH2019), 2019.

G. Abrami, A. Mehler, P. Helfrich, and E. Rieb. {TextAnnotator}: A Browser-based Framework for Annotating Textual Data in Digital Humanities. Proceedings of the Digital Humanities Austria 2018, 2018.

G. Abrami and A. Mehler. A UIMA Database Interface for Managing NLP-related Text Annotations. Proceedings of the 11th edition of the Language Resources and Evaluation Conference, May 7 - 12, 2018.

S. Ahmed and A. Mehler. Resource-Size matters: Improving Neural Named Entity Recognition with Optimized Large Corpora. Proceedings of the 17th IEEE International Conference on Machine Learning and Applications (ICMLA), 2018.

D. Baumartz, T. Uslu, and A. Mehler. {LTV}: Labeled Topic Vector. Proceedings of {COLING 2018}, the 27th International Conference on Computational Linguistics: System Demonstrations, August 20-26, The COLING 2018 Organizing Committee, 2018.

C. Driller, M. Koch, M. Schmidt, C. Weiland, T. Hörnschemeyer, T. Hickler, G. Abrami, S. Ahmed, R. Gleim, W. Hemati, T. Uslu, A. Mehler, A. Pachzelt, J. Rexhepi, T. Risse, J. Schuster, G. Kasperek, and A. Hausinger. Workflow and Current Achievements of BIOfid, an Information Service Mobilizing Biodiversity Data from Literature Sources. Biodiversity Information Science and Standards, Pensoft Publishers, volume 2, 2018.

P. Helfrich, E. Rieb, G. Abrami, A. Lücking, and A. Mehler. TreeAnnotator: Versatile Visual Annotation of Hierarchical Text Relations. Proceedings of the 11th edition of the Language Resources and Evaluation Conference, May 7 - 12, 2018.

G. Kasperek and M. Schmidt. A Specialised Information Service for Biodiversity Research, involving large-scale data mobilisation by mining German biodiversity literature. XIX International Botanical Congress (IBC2017), July 23-29, 2018.

A. Kett, G. Abrami, A. Mehler, and C. Spiekermann. {Resources2City Explorer}: A System for Generating Interactive Walkable Virtual Cities out of File Systems. Proceedings of the 31st ACM User Interface Software and Technology Symposium, 2018.

M. Koch, C. Driller, M. Schmidt, T. Hörnschemeyer, C. Weiland, Miko I, M. Yoder, and T. Hickler. Current progress in the development of taxonomic and anatomical ontologies within the scope of BIOfid. Biodiversity Information Science and Standards, Pensoft Publishers, volume 2, 2018.

T. Uslu and A. Mehler. {PolyViz}: a Visualization System for a Special Kind of Multipartite Graphs. Proceedings of the IEEE VIS 2018, 2018.

T. Uslu, A. Mehler, D. Baumartz, A. Henlein, and W. Hemati. {fastSense}: An Efficient Word Sense Disambiguation Classifier. Proceedings of the 11th edition of the Language Resources and Evaluation Conference, May 7 - 12, 2018.

C. Weiland, C. Driller, M. Koch, M. Schmidt, G. Abrami, S. Ahmed, A. Mehler, A. Pachzelt, G. Kasperek, A. Hausinger, and T. Hörnschemeyer. {BioFID}, a platform to enhance accessibility of biodiversity data. Proceedings of the 10th International Conference on Ecological Informatics, 2018.

W. Hemati, A. Mehler, and T. Uslu. {CRFVoter}: Chemical Entity Mention, Gene and Protein Related Object recognition using a conglomerate of CRF based tools. BioCreative V.5. Proceedings, 2017.

M. Koch, G. Kasperek, T. Hörnschemeyer, A. Mehler, C. Weiland, and A. Hausinger. Setup of BIOfid, a new Specialised Information Service for Biodiversity Research. Biodiversity Information Science and Standards, Pensoft Publishers, volume 1, 2017.