G. Abrami, D. Baumartz, and A. Mehler
DUUI: A Toolbox for the Construction of a new Kind of Natural Language Processing
Proceedings of the DHd 2025: Under Construction. Geisteswissenschaften und Data Humanities, Zenodo, 2025
duui
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G. Abrami, M. Genios, F. Fitzermann, D. Baumartz, and A. Mehler
Docker Unified UIMA Interface: New perspectives for NLP on big data
SoftwareX, 29, 102033, 2025
duui docker kubernetes uima distributed nlp
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K. Bönisch, G. Abrami, and A. Mehler
Towards Unified, Dynamic and Annotation-based Visualisations and Exploration of Annotated Big Data Corpora with the Help of Unified Corpus Explorer
2025 Annual Conference of the North American Chapter of the Association for Computational Linguistics -- System Demonstration Track (accepted), 2025
uce biofid
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G. Abrami and A. Mehler
Efficient, uniform and scalable parallel NLP pre-processing with DUUI: Perspectives and Best Practice for the Digital Humanities
Digital Humanities Conference 2024 - Book of Abstracts (DH 2024), Zenodo, 2024
duui
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M. Konca, A. Lücking, and A. Mehler
German SRL: Corpus Construction and Model Training
Proceedings of the 2024 Joint International Conference on Computational Linguistics, Language Resources and Evaluation (LREC-COLING 2024), ELRA and ICCL, 2024
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A. Lücking, G. Abrami, L. Hammerla, M. Rahn, D. Baumartz, S. Eger, and A. Mehler
Dependencies over Times and Tools (DoTT)
Proceedings of the 2024 Joint International Conference on Computational Linguistics, Language Resources and Evaluation (LREC-COLING 2024), ELRA and ICCL, 2024
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A. Leonhardt, G. Abrami, D. Baumartz, and A. Mehler
Unlocking the Heterogeneous Landscape of Big Data NLP with DUUI
Findings of the Association for Computational Linguistics: EMNLP 2023, Association for Computational Linguistics, 2023
duui
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A. Lücking, M. Stoeckel, G. Abrami, and A. Mehler
I still have Time(s): Extending HeidelTime for German Texts
Proceedings of the 13th Language Resources and Evaluation Conference, 2022
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P. Fischer, A. Smajic, G. Abrami, and A. Mehler
Multi-Type-TD-TSR - Extracting Tables from Document Images using a Multi-stage Pipeline for Table Detection and Table Structure Recognition: from OCR to Structured Table Representations
Proceedings of the 44th German Conference on Artificial Intelligence, 2021
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A. Lücking, C. Driller, M. Stoeckel, G. Abrami, A. Pachzelt, and A. Mehler
Multiple Annotation for Biodiversity: Developing an annotation framework among biology, linguistics and text technology
Language Resources and Evaluation, 2021
biofid
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A. Pachzelt, G. Kasperek, A. Lücking, G. Abrami, and C. Driller
Semantic Search in Legacy Biodiversity Literature: Integrating data from different data infrastructures
Biodiversity Information Science and Standards, 5, e74251, 2021
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G. Abrami, A. Henlein, A. Lücking, A. Kett, P. Adeberg, and A. Mehler
Unleashing annotations with TextAnnotator: Multimedia, multi-perspective document views for ubiquitous annotation
Proceedings of the Seventeenth Joint ACL - ISO Workshop on Interoperable Semantic Annotation (ISA-17), 2021
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C. Driller, M. Koch, G. Abrami, W. Hemati, A. Lücking, A. Mehler, A. Pachzelt, and G. Kasperek
Fast and Easy Access to Central European Biodiversity Data with BIOfid
Biodiversity Information Science and Standards, 2020
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C. Driller, M. Koch, G. Abrami, M. Stoeckel, A. Pachzelt, and G. Kasperek
Tracing back biodiversity to the 19th century via text mining
World Biodiversity Forum, Davos, Switzerland, February 23-28, 2020
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C. Driller, M. Koch, G. Abrami, M. Stoeckel, A. Pachzelt, and G. Kasperek
Mobilising Biodiversity Knowledge By Mining Heritage Literature
World Biodiversity Forum, Davos, Switzerland, February 23-28, 2020
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G. Abrami, A. Mehler, and M. Stoeckel
TextAnnotator: A web-based annotation suite for texts
Proceedings of the Digital Humanities 2020, 2020
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G. Abrami, M. Stoeckel, and A. Mehler
TextAnnotator: A UIMA based tool for simultaneous and collaborative annotation of texts
12th International Conference on Language Resources and Evaluation (LREC 2020), European Language Resources Association, 2020
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A. Henlein and A. Mehler
On the Influence of Coreference Resolution on Word Embeddings in Lexical-semantic Evaluation Tasks
12th International Conference on Language Resources and Evaluation (LREC 2020), 2020
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J. Hildebrand, W. Hemati, and A. Mehler
Recognizing Sentence-level Logical Document Structures with the Help of Context-free Grammars
12th International Conference on Language Resources and Evaluation (LREC 2020), 2020
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M. Koch and T. Hörnschemeyer
Biodiversity of the apterygote hexapods - a global assessment
26th International Congress of Entomology, Helsinki, Finland, July 19-24, 2020
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M. Stoeckel, W. Hemati, and A. Mehler
When Specialization Helps: Using Pooled Contextualized Embeddings to Detect Chemical and Biomedical Entities in Spanish
Proceedings of The 5th Workshop on BioNLP Open Shared Tasks, Association for Computational Linguistics, 2019
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C. Driller, G. Abrami, M. Koch, G. Kasperek, A. Pachzelt, and A. Mehler
Accessing knowledge from legacy biodiversity literature
Biodiversity Next, Leiden, Netherlands, October 22-25, 2019
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M. Koch, C. Driller, I. Mikó, and M. Yoder
Exploring biodiversity knowledge by ontologies
Biodiversity Next, Leiden, Netherlands, October 22-25, 2019
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C. Driller, G. Abrami, M. Stoeckel, M. Koch, and G. Kasperek
Tracing back biodiversity to the 19th century via text mining
49th Annual Meeting of the Ecological Society of Germany, Austria and Switzerland, Münster, Germany; September 9-13, 2019
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M. Koch, C. Driller, C. Weiland, and T. Hörnschemeyer
Modern information technologies for the study of myriapod biodiversity
18th International Congress of Myriapodology, Budapest, Hungary, August 25-31, 2019
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G. Abrami, A. Mehler, A. Lücking, E. Rieb, and P. Helfrich
TextAnnotator: A flexible framework for semantic annotations
Proceedings of the Fifteenth Joint ACL - ISO Workshop on Interoperable Semantic Annotation, (ISA-15), 2019
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W. Hemati and A. Mehler
CRFVoter: gene and protein related object recognition using a conglomerate of CRF-based tools
Journal of Cheminformatics, 11(1), 2019
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W. Hemati and A. Mehler
LSTMVoter: chemical named entity recognition using a conglomerate of sequence labeling tools
Journal of Cheminformatics, 11(1), 2019
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S. Ahmed, M. Stoeckel, C. Driller, A. Pachzelt, and A. Mehler
BIOfid Dataset: Publishing a German Gold Standard for Named Entity Recognition in Historical Biodiversity Literature
Proceedings of the 23rd Conference on Computational Natural Language Learning (CoNLL) (accepted), Association for Computational Linguistics, 2019
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W. Hemati, A. Mehler, T. Uslu, and G. Abrami
Der TextImager als Front- und Backend für das verteilte NLP von Big Digital Humanities Data
Proceedings of the 6th Digital Humanities Conference in the German-speaking Countries, DHd 2019, 2019
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M. Stoeckel, W. Hemati, and A. Mehler
When Specialization Helps: Using Pooled Contextualized Embeddings to Detect Chemical and Biomedical Entities in Spanish
Proceedings of the International Workshop on BioNLP Open Shared Tasks (BioNLP-OST) 2019 (accepted), Association for Computational Linguistics SIGDAT and Asian Federation of Natural Language Processing, 2019
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T. Uslu, A. Mehler, and D. Baumartz
Computing Classifier-based Embeddings with the Help of text2ddc
Proceedings of the 20th International Conference on Computational Linguistics and Intelligent Text Processing, (CICLing 2019), 2019
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T. Uslu, A. Mehler, C. Schulz, and D. Baumartz
BigSense: a Word Sense Disambiguator for Big Data
Proceedings of the Digital Humanities 2019, (DH2019), 2019
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G. Abrami, A. Mehler, P. Helfrich, and E. Rieb
TextAnnotator: A Browser-based Framework for Annotating Textual Data in Digital Humanities
Proceedings of the Digital Humanities Austria 2018, 2018
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G. Abrami and A. Mehler
A UIMA Database Interface for Managing NLP-related Text Annotations
Proceedings of the 11th edition of the Language Resources and Evaluation Conference, May 7 - 12, 2018
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S. Ahmed and A. Mehler
Resource-Size matters: Improving Neural Named Entity Recognition with Optimized Large Corpora
Proceedings of the 17th IEEE International Conference on Machine Learning and Applications (ICMLA), 2018
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D. Baumartz, T. Uslu, and A. Mehler
LTV: Labeled Topic Vector
Proceedings of {COLING 2018}, the 27th International Conference on Computational Linguistics: System Demonstrations, August 20-26, The COLING 2018 Organizing Committee, 2018
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C. Driller, M. Koch, M. Schmidt, C. Weiland, T. Hörnschemeyer, T. Hickler, G. Abrami, S. Ahmed, et al.
Workflow and Current Achievements of BIOfid, an Information Service Mobilizing Biodiversity Data from Literature Sources
Biodiversity Information Science and Standards, 2, 2018
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P. Helfrich, E. Rieb, G. Abrami, A. Lücking, and A. Mehler
TreeAnnotator: Versatile Visual Annotation of Hierarchical Text Relations
Proceedings of the 11th edition of the Language Resources and Evaluation Conference, May 7 - 12, 2018
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G. Kasperek and M. Schmidt
A Specialised Information Service for Biodiversity Research, involving large-scale data mobilisation by mining German biodiversity literature
XIX International Botanical Congress (IBC2017), July 23-29, 2018
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A. Kett, G. Abrami, A. Mehler, and C. Spiekermann
Resources2City Explorer: A System for Generating Interactive Walkable Virtual Cities out of File Systems
Proceedings of the 31st ACM User Interface Software and Technology Symposium, 2018
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M. Koch, C. Driller, M. Schmidt, T. Hörnschemeyer, C. Weiland, Miko I, M. Yoder, and T. Hickler
Current progress in the development of taxonomic and anatomical ontologies within the scope of BIOfid
Biodiversity Information Science and Standards, 2, 2018
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T. Uslu and A. Mehler
PolyViz: a Visualization System for a Special Kind of Multipartite Graphs
Proceedings of the IEEE VIS 2018, 2018
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T. Uslu, A. Mehler, D. Baumartz, A. Henlein, and W. Hemati
fastSense: An Efficient Word Sense Disambiguation Classifier
Proceedings of the 11th edition of the Language Resources and Evaluation Conference, May 7 - 12, 2018
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C. Weiland, C. Driller, M. Koch, M. Schmidt, G. Abrami, S. Ahmed, A. Mehler, A. Pachzelt, et al.
BioFID, a platform to enhance accessibility of biodiversity data
Proceedings of the 10th International Conference on Ecological Informatics, 2018
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W. Hemati, A. Mehler, and T. Uslu
CRFVoter: Chemical Entity Mention, Gene and Protein Related Object recognition using a conglomerate of CRF based tools
BioCreative V.5. Proceedings, 2017
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M. Koch, G. Kasperek, T. Hörnschemeyer, A. Mehler, C. Weiland, and A. Hausinger
Setup of BIOfid, a new Specialised Information Service for Biodiversity Research
Biodiversity Information Science and Standards, 1, 2017
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