SPECIALISED INFORMATION SERVICE BIODIVERSITY

Publications of the BIOfid team

2019


Abrami G., Mehler A., Lücking A., Rieb E., and Helfrich P.
TextAnnotator: A flexible framework for semantic annotations

Proceedings of the Fifteenth Joint ACL - ISO Workshop on Interoperable Semantic Annotation, (ISA-15), 2019

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Ahmed S., Stoeckel M., Driller C., Pachzelt A., and Mehler A.
BIOfid Dataset: Publishing a German Gold Standard for Named Entity Recognition in Historical Biodiversity Literature

Proceedings of the 23rd Conference on Computational Natural Language Learning (CoNLL) (accepted), Association for Computational Linguistics, 2019

Driller C., Abrami G., Koch M., Kasperek G., Pachzelt A., and Mehler A.
Accessing knowledge from legacy biodiversity literature

Biodiversity Next, Leiden, Netherlands, October 22-25, 2019

Driller C., Abrami G., Stoeckel M., Koch M., and Kasperek G.
Tracing back biodiversity to the 19th century via text mining

49th Annual Meeting of the Ecological Society of Germany, Austria and Switzerland, Münster, Germany; September 9-13, 2019

Hemati W. and Mehler A.
CRFVoter: gene and protein related object recognition using a conglomerate of CRF-based tools

Journal of Cheminformatics, 11(1), 2019

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Hemati W. and Mehler A.
LSTMVoter: chemical named entity recognition using a conglomerate of sequence labeling tools

Journal of Cheminformatics, 11(1), 2019

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Hemati W., Mehler A., Uslu T., and Abrami G.
Der TextImager als Front- und Backend für das verteilte NLP von Big Digital Humanities Data

Proceedings of the 6th Digital Humanities Conference in the German-speaking Countries, DHd 2019, 2019

Koch M., Driller C., Mikó I., and Yoder M.
Exploring biodiversity knowledge by ontologies

Biodiversity Next, Leiden, Netherlands, October 22-25, 2019

Koch M., Driller C., Weiland C., and Hörnschemeyer T.
Modern information technologies for the study of myriapod biodiversity

18th International Congress of Myriapodology, Budapest, Hungary, August 25-31, 2019

Stoeckel M., Hemati W., and Mehler A.
When Specialization Helps: Using Pooled Contextualized Embeddings to Detect Chemical and Biomedical Entities in Spanish

Proceedings of The 5th Workshop on BioNLP Open Shared Tasks, Association for Computational Linguistics, 2019

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Stoeckel M., Hemati W., and Mehler A.
When Specialization Helps: Using Pooled Contextualized Embeddings to Detect Chemical and Biomedical Entities in Spanish

Proceedings of the International Workshop on BioNLP Open Shared Tasks (BioNLP-OST) 2019 (accepted), Association for Computational Linguistics SIGDAT and Asian Federation of Natural Language Processing, 2019

Uslu T., Mehler A., and Baumartz D.
Computing Classifier-based Embeddings with the Help of text2ddc

Proceedings of the 20th International Conference on Computational Linguistics and Intelligent Text Processing, (CICLing 2019), 2019

Uslu T., Mehler A., Schulz C., and Baumartz D.
BigSense: a Word Sense Disambiguator for Big Data

Proceedings of the Digital Humanities 2019, (DH2019), 2019